RNAsamba is a tool for computing the coding potential of RNA sequences using a neural network classification model. It can be used to identify mRNAs and lncRNAs without relying on database searches.

Use RNAsamba online

Upload a FASTA file containing transcript sequences (example). We allow the following file extensions: fasta, fa and fna. After submitting your data, you will be redirected to a page where you can view and download your results as soon as they are ready.

Please select a file.
Use RNAsamba locally

RNAsamba is available as a package for local installation. It provides a command-line which includes a command for training new models and additional options for classification. Check our documentation for details on how to install and use RNAsamba.

Cite RNAsamba

"RNAsamba: neural network-based assessment of the protein-coding potential of RNA sequences".

Camargo, A. P., Sourkov, V., Pereira, G. A. G. & Carazzolle, M. F. – NAR Genomics and Bioinformatics (2020).

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